Gene expression
The Gene Expression Omnibus (GEO) is a curated collection of public gene expression datasets.
Datasets
- Eisen et al, 1998: Cluster analysis and display of genome-wide expression
patterns (doi, pdf)
- Data in tabular format
- Popular, at 15k+ citations
- Example analysis: Ben-Hur & Guyon, 2003: Detecting stable clusters using PCA
(doi, pdf)
- SVM classifier referenced in paper
- Garber et al, 2001: Diversity of gene expression in adenocarcinoma of the lung
(doi, GEO )
- Cleaned data in tabular format
- Appears in lecture 6 of Zhijin Wu’s lecture notes
Literature
- Rung & Brazma, 2013: Reuse of public genome-wide gene expression data (doi)